Set up model environment
Set up the model environment
You have to do this only once.
But before you set up the model environment on guillimin or colosse, make sure you have set up the SSM environment. On ou do have to set this up yourself!!! If you have not done this already, click here for instructions).
- Allow 'ssh $TRUE_HOST' without typing password:
cd ~/.ssh
Only if there is no(!) file 'id_rsa.pub' create it with:
ssh-keygen (press just 'Enter' whenever asked a question, 3 times)
then
cat id_rsa.pub >> authorized_keys - Create the "machine name" guillimin:
DO THIS ONLY ONCE !!!
cat >> ~/.ssh/config << EOF
#
Host guillimin
Hostname localhost
EOF - Create directories for running CRCM5:
This is different depending on the machine on which you are.
2.1 Create directory/link for the execution directory (where the model will be running):
mkdir ~/MODEL_EXEC_RUN
On guillimin:
For people working for or having their account via Pierre Gauthier your project space is:
PROJECT_SPACE=/gs/project/xgk-345-aa
If you are with Laxmi Sushama, René Laprise or Julie Theriault your project space is:
PROJECT_SPACE=/gs/project/ugh-612-aa
If you are with another PI, ask your PI for your project space.
mkdir -p ${PROJECT_SPACE}/${USER}/EXECDIR
ln -s ${PROJECT_SPACE}/${USER}/EXECDIR ~/MODEL_EXEC_RUN/localhost
ln -s ${PROJECT_SPACE}/${USER}/EXECDIR ~/MODEL_EXEC_RUN/guillimin
On marvin:
mkdir -p /local/fiber1/${USER}/EXECDIR
ln -s /local/fiber1/${USER}/EXECDIR ~/MODEL_EXEC_RUN/headnode
2.2 Create directory/link for the listings:
While the model is running, all listing go into ~/listings/${TRUE_HOST}.
But at the end of each job all listings get zipped and transfered to Arch mach in your Archdir as specified in your 'configexp.dot.cfg'. Unless, of course, something went wrong...
mkdir ~/listings
On guillimin:
mkdir -p ${PROJECT_SPACE}/${USER}/Listings
ln -s ${PROJECT_SPACE}/${USER}/Listings ~/listings/localhost
ln -s ${PROJECT_SPACE}/${USER}/Listings ~/listings/guillimin
On marvin:
mkdir -p /local/sata2/${USER}/Listings
ln -s /local/sata2/${USER}/Listings ~/listings/headnode
The following you only have to do on guillimin: - Set project name of which to use the core allocation:
You will have to create a file in your HOME on guillimin which is called:
${HOME}/.CLUMEQ_accnt
This file has to contain 1 variable called 'RAPid', set to the RAPid of the project under which you want to submit your job.
For people working for or having their account via Pierre Gauthier you will have to set in the above file:
RAPid=xgk-345-ae
If you are with Laxmi Sushama set:
RAPid=ugh-612-ac
or if you are with René Laprise you will have to set:
RAPid=bgx-133-ab
If you are with another PI, ask your PI for the "job accounting number".
Have a look at my file if you like:
~winger/.CLUMEQ_accnt
